STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA39889.1Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)    
Predicted Functional Partners:
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifical [...]
 
 
 
 0.834
AKA37430.1
gpN; N protein; structural capsid protein; bacteriophage P2-like virions include a head and a tail; N is the major head protein; the mature capsid contains mainly the processed form of the protein N*, which lacks 31 amino acids at the N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.779
AKA37429.1
Phage capsid scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.772
AKA37424.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.771
AKA37448.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.737
AKA37449.1
Tail assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.727
AKA37431.1
Hypothetical protein; M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.700
AKA37428.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.671
AKA37427.1
Presumed portal vertex protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
AKA37450.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.622
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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