STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeeAMembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)    
Predicted Functional Partners:
tsgA
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
yccS_2
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
ampE
Regulatory protein AmpE; Involved in regulation of beta-lactamase; putative signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
rstB
Sensor protein RstB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
AKA39395.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
nifU
Scaffolding protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.567
cdh
CDP-diacylglycerol pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
setA
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.532
ydjM
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.518
yhcP
P-hydroxybenzoic acid efflux subunit AaeB; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
  
     0.517
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.