Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKA37705.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)    
Predicted Functional Partners:
AKA37706.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.957
AKA37708.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.917
AKA37710.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.887
AKA37690.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.804
AKA37701.1
Tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
AKA37703.1
Hypothetical protein; FIG111678: IS, phage, Tn; transposon-related functions; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
AKA37704.1
Prophage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
AKA37700.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.793
AKA37699.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.788
AKA37702.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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