STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA37708.1Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)    
Predicted Functional Partners:
AKA37710.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.985
AKA37712.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.954
AKA37711.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
AKA37709.1
Peptidase S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.940
AKA37705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.917
AKA37706.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
AKA37713.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.894
p1
Serine 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.841
AKA37690.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.783
shlA_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.