Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
scsACopper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
scsB
Protein-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.690
bdbD
Copper-sensitivity protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.605
msrAB
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.604
flk
Flagella biosynthesis regulator; Acts as a regulator of flagellar gene expression by modulating the protein level of the anti sigma factor FlgM upon sensing ring completion or hook elongation. Flk could inhibit FlgM secretion by acting as a braking system for the flagellar-associated type III secretion system.
       0.500
AKA37817.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.443
trp1400B_3
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.417
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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