Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tadFHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)    
Predicted Functional Partners:
tadB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.942
tadE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.937
AKA38264.1
Tight adherance operon protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.853
rcpA
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
     
 0.838
tadV
Tight adherance operon protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.826
tadC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.826
tadZ
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.822
rcpC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.818
AKA38261.1
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.806
rcpBR
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.605
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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