Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
shlB_3Hemolysin activator/exporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa)    
Predicted Functional Partners:
fhaB
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
shlB_1
Hemolysin activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.669
yhlB
Hemolysin activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.664
AKA38312.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
shlA_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.607
AKA39975.1
CsuC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.559
fimD_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.552
sulA
Cell division protein; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.
  
    0.527
psaC
Pilin outer membrane usher protein SafC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.518
fimD_3
Usher protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.518
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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