STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA38317.1Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
AKA39711.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.549
AKA39683.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.547
afr_2
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
yaeQ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.493
AKA37500.1
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
AKA37694.1
Prophage baseplate assembly protein V; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
rlmF
23S rRNA methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.460
AKA37696.1
DNA circularization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.438
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.427
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.