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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ChiY_3Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (808 aa)    
Predicted Functional Partners:
yopH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
chb
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.542
dapA1
N-acetylneuraminate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
AKA37448.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.468
AKA38044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.468
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
  
     0.465
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.465
ugd
UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.427
bglX1
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
 0.415
bcsZ
endo-1,4-D-glucanase; Catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.415
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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