STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prsE_2Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)    
Predicted Functional Partners:
hasD_2
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.947
pF
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.928
pD
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.833
p1
Serine 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.812
macB
Macrolide transporter; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.811
tolC_2
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.805
AKA38073.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.675
AKA39962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.658
hxuC_2
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.502
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
      
 0.435
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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