STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA38769.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)    
Predicted Functional Partners:
AKA38447.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.898
AKA37692.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.868
AKA37933.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.868
AKA37450.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.838
hofQ
Porin; Outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.832
AKA38448.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.800
AKA37439.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.798
AKA38450.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.798
AKA38454.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.713
AKA39956.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.713
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.