Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKA39975.1CsuC protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
caf1A
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.969
AKA39976.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.916
AKA38776.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
AKA38777.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.902
fimD_4
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.826
fimD_3
Usher protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.818
fimD_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.786
fimD_1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.781
psaC
Pilin outer membrane usher protein SafC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.781
mrfC_2
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.773
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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