STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrpBProtease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)    
Predicted Functional Partners:
yhbU_1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
AKA39067.1
SCP-2 sterol transfer family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
yhbU_2
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.822
narR
Nitrate/nitrite sensor protein NarX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.631
yhlA
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.550
p1
Serine 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.509
AKA39068.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.443
ytfE
Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
     0.409
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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