Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phnPCarbon-phosphorus lyase complex accessory protein; Required for the use of phosphonates and phosphite as phosphorus sources; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
AKA39078.1
Carbon-phosphorus lyase complex subunit PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 
 0.984
phnM
Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.957
phnN
Hypothetical protein; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
 
 0.955
lolD_2
Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.946
phnI
Carbon-phosphorus lyase complex subunit PhnI; Required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.923
phnH
Carbon-phosphorus lyase complex subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
AKA39081.1
Phosphonate C-P lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.858
phnK
Phosphonate C-P lyase system protein PhnK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.853
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
      
 0.737
mnmA
tRNA 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family.
     
 0.720
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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