Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
icaBHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)    
Predicted Functional Partners:
ycdZ
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
AKA39801.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.580
cadC_2
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
yfcE
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
yadH
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
nanT
Sialic acid transporter; Catalyzes the proton-dependent transport of sialic acid. Belongs to the major facilitator superfamily. Sialate:H(+) symporter (SHS) (TC 2.A.1.12) family.
  
     0.450
yadG
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.443
yecN
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
dcuC
Responsible for the transport of C4-dicarboxylates during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
fabG_4
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.425
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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