Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prgHHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)    
Predicted Functional Partners:
ysaJ
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.976
ysaI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.967
ysaC
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.966
spaP
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.963
ysaW
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.954
ysaU
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.945
ysaK
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.910
pulD
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.908
ysaV
Type III secretion system protein InvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.906
ysaT
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.897
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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