STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ysaEHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
ysaC
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.845
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.822
ysaV
Type III secretion system protein InvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.814
ysaS
Type III secretion apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.806
ysaW
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.803
ysaT
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.792
ysaQ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
ysaK
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.767
spaP
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.764
ysaN
ATP synthase; Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells; probable catalytic subunit of a protein translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.752
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.