Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ysaUType III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
fliR
Flagellar biosynthesis protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
 0.998
fliP
Flagellar biosynthesis protein flip; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.993
fliQ
Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.993
spaP
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
ysaT
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
flgG
Makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
ysaV
Type III secretion system protein InvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
flgC
With FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.978
ysaS
Type III secretion apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
ysaN
ATP synthase; Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells; probable catalytic subunit of a protein translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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