STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA39705.1Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
AKA39669.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
AKA37250.1
Virulence factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
AKA39435.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
bvgS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
AKA38875.1
Pilus assembly protein HofM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
AKA37980.1
Stationary phase inducible protein CsiE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
vacJ
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
AKA39706.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
AKA37249.1
Virulence factor SrfB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
echA8
enoyl-CoA hydratase; Regulator of pathogenicity factor RpfF; involved in synthesis of a diffusible signal factor involved in the regulation of extracellular enzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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