ybjP protein (Yersinia ruckeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ybjP

Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)

Predicted Functional Partners:

ybjQ

0.549

artP-2

0.543

artI3

0.498

artQ

0.420

artM

0.417

fliL

0.408

Your Current Organism:

Yersinia ruckeri

NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
artI3	artM	UGYR_16315	UGYR_16305	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artI3	artP-2	UGYR_16315	UGYR_16320	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artI3	artQ	UGYR_16315	UGYR_16310	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artI3	ybjP	UGYR_16315	UGYR_16325	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
artM	artI3	UGYR_16305	UGYR_16315	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.999
artM	artP-2	UGYR_16305	UGYR_16320	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artM	artQ	UGYR_16305	UGYR_16310	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artM	ybjP	UGYR_16305	UGYR_16325	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
artP-2	artI3	UGYR_16320	UGYR_16315	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.999
artP-2	artM	UGYR_16320	UGYR_16305	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artP-2	artQ	UGYR_16320	UGYR_16310	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artP-2	ybjP	UGYR_16320	UGYR_16325	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
artQ	artI3	UGYR_16310	UGYR_16315	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.999
artQ	artM	UGYR_16310	UGYR_16305	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artQ	artP-2	UGYR_16310	UGYR_16320	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
artQ	ybjP	UGYR_16310	UGYR_16325	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
fliL	ybjP	UGYR_03630	UGYR_16325	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
ybjP	artI3	UGYR_16325	UGYR_16315	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.498
ybjP	artM	UGYR_16325	UGYR_16305	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
ybjP	artP-2	UGYR_16325	UGYR_16320	Lipoprotein; Induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About