STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGM29620.1Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family. (258 aa)    
Predicted Functional Partners:
KGM29623.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.963
KGM29622.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
KGM29621.1
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
KGM29619.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.790
KGM29618.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.763
ghrA
Bifunctional glyoxylate/hydroxypyruvate reductase A; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.
  
 
  0.742
KGM29115.1
MocC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.626
KGM29921.1
Lactate dehydrogenase; Fermentative; catalyzes the formationof pyruvate from lactate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.620
KGM28676.1
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
     
 0.583
KGM29617.1
Gluconate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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