Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KGM29894.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
KGM29895.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.966
KGM29777.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.958
KGM29210.1
Translation repressor RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.571
KGM26416.1
Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.557
KGM27632.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RelE toxin family.
 
   0.549
KGM26354.1
Plasmid stabilization protein ParE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.549
KGM29893.1
Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.509
KGM27960.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.508
KGM29776.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.482
KGM26486.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.474
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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