Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGM29025.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)    
Predicted Functional Partners:
KGM29027.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.961
KGM29023.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
KGM29024.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.947
KGM29028.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.947
KGM29031.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.905
KGM29030.1
Phage tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.899
KGM29606.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.898
KGM28965.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.898
KGM28984.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.898
KGM29021.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.898
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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