KGM29028.1 protein (Photorhabdus luminescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

KGM29028.1

Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)

Predicted Functional Partners:

KGM29023.1

0.968

KGM29027.1

0.956

KGM29025.1

0.947

KGM29024.1

0.941

KGM29031.1

0.908

KGM29603.1

0.886

KGM29698.1

0.886

KGM28968.1

0.886

KGM28987.1

0.886

KGM29006.1

0.886

Your Current Organism:

Photorhabdus luminescens

NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb

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... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM28968.1	KGM29024.1	KS18_04105	KS18_04425	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KGM28968.1	KGM29025.1	KS18_04105	KS18_04430	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
KGM28968.1	KGM29027.1	KS18_04105	KS18_04440	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
KGM28968.1	KGM29028.1	KS18_04105	KS18_04445	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KGM28968.1	KGM29031.1	KS18_04105	KS18_04460	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
KGM28987.1	KGM29024.1	KS18_04200	KS18_04425	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KGM28987.1	KGM29025.1	KS18_04200	KS18_04430	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KGM28987.1	KGM29027.1	KS18_04200	KS18_04440	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KGM28987.1	KGM29028.1	KS18_04200	KS18_04445	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KGM28987.1	KGM29031.1	KS18_04200	KS18_04460	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
KGM29006.1	KGM29024.1	KS18_04305	KS18_04425	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KGM29006.1	KGM29025.1	KS18_04305	KS18_04430	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
KGM29006.1	KGM29027.1	KS18_04305	KS18_04440	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KGM29006.1	KGM29028.1	KS18_04305	KS18_04445	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KGM29006.1	KGM29031.1	KS18_04305	KS18_04460	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
KGM29023.1	KGM29024.1	KS18_04420	KS18_04425	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KGM29023.1	KGM29025.1	KS18_04420	KS18_04430	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KGM29023.1	KGM29027.1	KS18_04420	KS18_04440	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KGM29023.1	KGM29028.1	KS18_04420	KS18_04445	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KGM29023.1	KGM29031.1	KS18_04420	KS18_04460	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909

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