KGM29031.1 protein (Photorhabdus luminescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photorhabdus luminescens

NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM28972.1	KGM29004.1	KS18_04125	KS18_04295	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KGM28972.1	KGM29011.1	KS18_04125	KS18_04330	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
KGM28972.1	KGM29023.1	KS18_04125	KS18_04420	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KGM28972.1	KGM29025.1	KS18_04125	KS18_04430	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
KGM28972.1	KGM29028.1	KS18_04125	KS18_04445	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
KGM28972.1	KGM29029.1	KS18_04125	KS18_04450	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KGM28972.1	KGM29030.1	KS18_04125	KS18_04455	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
KGM28972.1	KGM29031.1	KS18_04125	KS18_04460	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
KGM28972.1	KGM29703.1	KS18_04125	KS18_02185	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
KGM29004.1	KGM28972.1	KS18_04295	KS18_04125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KGM29004.1	KGM29011.1	KS18_04295	KS18_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
KGM29004.1	KGM29023.1	KS18_04295	KS18_04420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
KGM29004.1	KGM29025.1	KS18_04295	KS18_04430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
KGM29004.1	KGM29027.1	KS18_04295	KS18_04440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
KGM29004.1	KGM29028.1	KS18_04295	KS18_04445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
KGM29004.1	KGM29029.1	KS18_04295	KS18_04450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
KGM29004.1	KGM29030.1	KS18_04295	KS18_04455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
KGM29004.1	KGM29031.1	KS18_04295	KS18_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
KGM29004.1	KGM29703.1	KS18_04295	KS18_02185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KGM29011.1	KGM28972.1	KS18_04330	KS18_04125	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855