Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGM29036.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
KGM29035.1
Secondary type iv prepilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
KGM29037.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
KGM29038.1
Piln; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
KGM29039.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
KGM29040.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KGM29034.1
Prepilin; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.400
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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