STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGM29043.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
KGM29041.1
Type ii secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.838
KGM26745.1
Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.689
KGM29042.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.639
KGM28635.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.519
KGM29797.1
Pvp sensor (virulence sensor protein bvgs); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.497
KGM29040.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.495
KGM29034.1
Prepilin; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.455
KGM29039.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.454
KGM27817.1
Transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.443
KGM29038.1
Piln; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.