KGM29047.1 protein (Photorhabdus luminescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photorhabdus luminescens

NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM25952.1	KGM29047.1	KS18_23215	KS18_04545	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KGM27968.1	KGM29046.1	KS18_11210	KS18_04540	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KGM27968.1	KGM29047.1	KS18_11210	KS18_04545	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KGM27968.1	amiC	KS18_11210	KS18_16010	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KGM29046.1	KGM27968.1	KS18_04540	KS18_11210	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KGM29046.1	KGM29047.1	KS18_04540	KS18_04545	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KGM29046.1	KGM29048.1	KS18_04540	KS18_04550	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KGM29046.1	amiC	KS18_04540	KS18_16010	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
KGM29047.1	KGM25952.1	KS18_04545	KS18_23215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KGM29047.1	KGM27968.1	KS18_04545	KS18_11210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KGM29047.1	KGM29046.1	KS18_04545	KS18_04540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KGM29047.1	KGM29048.1	KS18_04545	KS18_04550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KGM29047.1	KGM29546.1	KS18_04545	KS18_01340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
KGM29047.1	KGM29846.1	KS18_04545	KS18_02995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KGM29047.1	amiC	KS18_04545	KS18_16010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KGM29047.1	gloB	KS18_04545	KS18_06720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	0.521
KGM29048.1	KGM29046.1	KS18_04550	KS18_04540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein L,D-transpeptidase; Catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KGM29048.1	KGM29047.1	KS18_04550	KS18_04545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KGM29048.1	gloB	KS18_04550	KS18_06720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	0.911
KGM29546.1	KGM29047.1	KS18_01340	KS18_04545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461