Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGM28839.1Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
KGM28842.1
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.815
KGM28840.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.807
KGM28841.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.807
KGM28838.1
Exotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.764
KGM28837.1
Fimbrial adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
KGM28836.1
MrfJ protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
KGM28843.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.603
KGM28844.1
Pilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.457
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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