STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGM28386.1Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)    
Predicted Functional Partners:
KGM28387.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.992
KGM28385.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.986
KGM26678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
KGM26467.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
KGM26456.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
KGM28626.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.493
KGM27450.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.479
KGM26876.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
KGM26219.1
Hemolysin activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.464
KGM29205.1
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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