KGM28554.1 protein (Photorhabdus luminescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photorhabdus luminescens

NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM28230.1	KGM28554.1	KS18_10005	KS18_08970	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
KGM28230.1	KGM28555.1	KS18_10005	KS18_08975	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KGM28230.1	KGM29161.1	KS18_10005	KS18_05240	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain alpha-keto acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
KGM28230.1	fadA	KS18_10005	KS18_11995	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.993
KGM28230.1	fadB	KS18_10005	KS18_12000	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.969
KGM28230.1	fadI	KS18_10005	KS18_16560	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.988
KGM28230.1	fadJ	KS18_10005	KS18_16555	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multifunctional fatty acid oxidation complex subunit alpha; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.970
KGM28554.1	KGM28230.1	KS18_08970	KS18_10005	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
KGM28554.1	KGM28555.1	KS18_08970	KS18_08975	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGM28554.1	KGM28556.1	KS18_08970	KS18_08980	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.777
KGM28554.1	KGM29161.1	KS18_08970	KS18_05240	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain alpha-keto acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KGM28554.1	KGM29332.1	KS18_08970	KS18_00160	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KGM28554.1	KGM29635.1	KS18_08970	KS18_01825	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.955
KGM28554.1	fadA	KS18_08970	KS18_11995	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.728
KGM28554.1	fadB	KS18_08970	KS18_12000	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.989
KGM28554.1	fadI	KS18_08970	KS18_16560	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.725
KGM28554.1	fadJ	KS18_08970	KS18_16555	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multifunctional fatty acid oxidation complex subunit alpha; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.989
KGM28555.1	KGM28230.1	KS18_08975	KS18_10005	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KGM28555.1	KGM28554.1	KS18_08975	KS18_08970	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGM28555.1	KGM28556.1	KS18_08975	KS18_08980	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.780