Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KGM28568.1Preprotein translocase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)    
Predicted Functional Partners:
KGM28571.1
Type III export protein pscF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.952
KGM28567.1
Preproteins translocase J; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.946
KGM28565.1
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.908
KGM28570.1
Preprotein translocase G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.908
KGM28566.1
Preprotein translocase K; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.894
KGM28576.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.855
KGM28596.1
Low calcium response locus protein H; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.815
KGM28595.1
Virulence factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.782
KGM28598.1
AopD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.754
KGM28573.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.731
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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