Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
KGM27067.1EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)    
Predicted Functional Partners:
KGM27068.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
KGM29780.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.978
KGM26523.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.970
KGM28284.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.956
KGM27065.1
Type VI secretion protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
KGM27066.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.949
KGM27063.1
Hcp family T6SS protein CtsH1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.911
KGM29792.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.882
KGM26515.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.882
KGM28231.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.875
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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