STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
viaAHypothetical protein; Contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)    
Predicted Functional Partners:
KGM25903.1
ATPase; Interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
KGM27995.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
KGM29295.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
KGM28180.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
KGM29651.1
Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
KGM29652.1
Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
KGM25896.1
ATP synthase F0F1 subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
KGM26089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
KGM26853.1
Cytochrome bd biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.735
zapC
Cell division protein ZapC; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.726
Your Current Organism:
Photorhabdus luminescens
NCBI taxonomy Id: 29488
Other names: ATCC 29999, CIP 106429, DSM 3368, P. luminescens, Xenorhabdus luminescens, strain Hb
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.