STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMK98451.1Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology. (1048 aa)    
Predicted Functional Partners:
KMK98146.1
Lipoprotein NlpI; May be involved in cell division.
    
 
 0.879
KMK94172.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.726
KMK97024.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.644
KMK98450.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.587
KMK94532.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.587
KMK93486.1
Structural toxin protein RtxA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.587
KMK92845.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.587
KMK92458.1
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.587
KMK90650.1
MSHA biogenesis protein MshQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.587
pheT
phenylalanine--tRNA ligase; Catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.564
Your Current Organism:
Aeromonas enteropelogenes
NCBI taxonomy Id: 29489
Other names: A. enteropelogenes, ATCC 49657 [[Aeromonas trota]], ATCC 49803, Aeromonas sp. LK14, Aeromonas trota, Aeromonas tructi, CCUG 29544 [[Aeromonas trota]], CCUG 30367 [[Aeromonas trota]], CECT 4255 [[Aeromonas trota]], CECT 4487, CIP 103677 [[Aeromonas trota]], CIP 104434, DSM 6394, DSM 7312 [[Aeromonas trota]], JCM 8315 [[Aeromonas trota]], JCM 8355, LMG 12223 [[Aeromonas trota]], LMG 12646, LMG:12223 [[Aeromonas trota]], LMG:12646, strain AH2 [[Aeromonas trota]], strain J11
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