STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMK98088.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)    
Predicted Functional Partners:
KMK98722.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.876
KMK95453.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.873
KMK90414.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.870
KMK98688.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.864
KMK90370.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.860
KMK95533.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.849
KMK97512.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.847
KMK92027.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.819
fdhD
Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
     
 0.769
KMK92490.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.752
Your Current Organism:
Aeromonas enteropelogenes
NCBI taxonomy Id: 29489
Other names: A. enteropelogenes, ATCC 49657 [[Aeromonas trota]], ATCC 49803, Aeromonas sp. LK14, Aeromonas trota, Aeromonas tructi, CCUG 29544 [[Aeromonas trota]], CCUG 30367 [[Aeromonas trota]], CECT 4255 [[Aeromonas trota]], CECT 4487, CIP 103677 [[Aeromonas trota]], CIP 104434, DSM 6394, DSM 7312 [[Aeromonas trota]], JCM 8315 [[Aeromonas trota]], JCM 8355, LMG 12223 [[Aeromonas trota]], LMG 12646, LMG:12223 [[Aeromonas trota]], LMG:12646, strain AH2 [[Aeromonas trota]], strain J11
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