Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KMK96288.1 | KMK96289.1 | VL01_07985 | VL01_07990 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protein HflC; HflC and HflK could regulate a protease. | 0.567 |
| KMK96288.1 | KMK96290.1 | VL01_07985 | VL01_07995 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | 0.567 |
| KMK96288.1 | hflX | VL01_07985 | VL01_08000 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.464 |
| KMK96289.1 | KMK96288.1 | VL01_07990 | VL01_07985 | Protein HflC; HflC and HflK could regulate a protease. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.567 |
| KMK96289.1 | KMK96290.1 | VL01_07990 | VL01_07995 | Protein HflC; HflC and HflK could regulate a protease. | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | 0.998 |
| KMK96289.1 | KMK98148.1 | VL01_07990 | VL01_04460 | Protein HflC; HflC and HflK could regulate a protease. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.522 |
| KMK96289.1 | hflB | VL01_07990 | VL01_11035 | Protein HflC; HflC and HflK could regulate a protease. | ATP-dependent metalloprotease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.981 |
| KMK96289.1 | hflX | VL01_07990 | VL01_08000 | Protein HflC; HflC and HflK could regulate a protease. | GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.835 |
| KMK96289.1 | hfq | VL01_07990 | VL01_08005 | Protein HflC; HflC and HflK could regulate a protease. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.541 |
| KMK96289.1 | miaA | VL01_07990 | VL01_08010 | Protein HflC; HflC and HflK could regulate a protease. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.569 |
| KMK96289.1 | nuoC | VL01_07990 | VL01_04290 | Protein HflC; HflC and HflK could regulate a protease. | NADH:ubiquinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.778 |
| KMK96289.1 | yidC | VL01_07990 | VL01_00390 | Protein HflC; HflC and HflK could regulate a protease. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.504 |
| KMK96290.1 | KMK96288.1 | VL01_07995 | VL01_07985 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.567 |
| KMK96290.1 | KMK96289.1 | VL01_07995 | VL01_07990 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | Protein HflC; HflC and HflK could regulate a protease. | 0.998 |
| KMK96290.1 | KMK98148.1 | VL01_07995 | VL01_04460 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.522 |
| KMK96290.1 | hflB | VL01_07995 | VL01_11035 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | ATP-dependent metalloprotease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.987 |
| KMK96290.1 | hflX | VL01_07995 | VL01_08000 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.918 |
| KMK96290.1 | hfq | VL01_07995 | VL01_08005 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.554 |
| KMK96290.1 | miaA | VL01_07995 | VL01_08010 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.683 |
| KMK96290.1 | nuoC | VL01_07995 | VL01_04290 | Membrane protease HflK; HflC and HflK could encode or regulate a protease. | NADH:ubiquinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.778 |
page 1 of 3