Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
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Experiments
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[Homology]
Score
KMK90680.1RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (2183 aa)    
Predicted Functional Partners:
KMK93191.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
 
 
 0.956
KMK97024.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.892
KMK93486.1
Structural toxin protein RtxA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.885
KMK97893.1
Peptidase M36; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.824
KMK90650.1
MSHA biogenesis protein MshQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.822
KMK98295.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.811
KMK96250.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.810
KMK97043.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.799
KMK98115.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.792
KMK91485.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.791
Your Current Organism:
Aeromonas enteropelogenes
NCBI taxonomy Id: 29489
Other names: A. enteropelogenes, ATCC 49657 [[Aeromonas trota]], ATCC 49803, Aeromonas sp. LK14, Aeromonas trota, Aeromonas tructi, CCUG 29544 [[Aeromonas trota]], CCUG 30367 [[Aeromonas trota]], CECT 4255 [[Aeromonas trota]], CECT 4487, CIP 103677 [[Aeromonas trota]], CIP 104434, DSM 6394, DSM 7312 [[Aeromonas trota]], JCM 8315 [[Aeromonas trota]], JCM 8355, LMG 12223 [[Aeromonas trota]], LMG 12646, LMG:12223 [[Aeromonas trota]], LMG:12646, strain AH2 [[Aeromonas trota]], strain J11
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