STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFUnannotated protein; Belongs to the ABC transporter superfamily. (233 aa)    
Predicted Functional Partners:
livM
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livG
Unannotated protein.
 
 
0.998
livK
Unannotated protein.
 
 
 0.998
A4SJ57_AERS4
Unannotated protein.
 
   
 
0.920
A4SRY1_AERS4
Unannotated protein.
 
      0.896
GCA_000820065_03890
Unannotated protein.
   
 
0.816
A4STI6_AERS4
Unannotated protein.
       0.773
fliM
Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.764
lfiM
Unannotated protein.
   
   0.686
Your Current Organism:
Aeromonas salmonicida
NCBI taxonomy Id: 29491
Other names: A. salmonicida subsp. salmonicida, Aeromonas salmonicida salmonicida, Aeromonas salmonicida subsp. salmonicida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.