Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EA26_08070Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)    
Predicted Functional Partners:
EA26_11895
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
EA26_09205
CbbY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.520
EA26_07135
Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
EA26_07420
Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
metAS
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
       0.505
EA26_03800
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
EA26_15190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
EA26_05430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
EA26_00210
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
EA26_08075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.464
Your Current Organism:
Vibrio navarrensis
NCBI taxonomy Id: 29495
Other names: ATCC 51183, CAIM 609, CCUG 28805, CIP 103381, LMG 15976, LMG:15976, V. navarrensis
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