STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001558055_04061Unannotated protein. (527 aa)    
Predicted Functional Partners:
GCA_001558055_04059
Unannotated protein.
 
 
 0.986
GCA_001558055_04063
Unannotated protein.
 
  
 0.969
BTO12_22770
Unannotated protein.
  
 
 0.876
BTO12_08945
Unannotated protein.
  
 
 0.876
GCA_001558055_04057
Unannotated protein.
 
  
 0.850
GCA_001558055_04056
Unannotated protein.
 
   
 0.833
BTO12_17390
Unannotated protein.
  
 
 0.832
GCA_001558055_04058
Unannotated protein.
 
   
 0.817
GCA_001558055_04055
Unannotated protein.
 
   
 0.809
GCA_001558055_04062
Unannotated protein.
       0.773
Your Current Organism:
Vibrio splendidus
NCBI taxonomy Id: 29497
Other names: ATCC 33125, Beneckea splendida, CECT 8714 [[Vibrio hemicentroti]], CIP 102893, DSM 19640, DSM 26178 [[Vibrio hemicentroti]], IFO 15643, KCTC 32085 [[Vibrio hemicentroti]], LMG 19031, LMG 4042, LMG:19031, LMG:4042, NBRC 15643, NCCB 53037, NCIMB 1, Photobacter splendidum, V. splendidus, Vibrio hemicentroti, Vibrio hemicentroti Kim et al. 2013, Vibrio sp. AlyHP32, strain AlyHP32 [[Vibrio hemicentroti]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.