STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pseGUDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase. (330 aa)    
Predicted Functional Partners:
pseI
Pseudaminic acid synthase.
 
 
 0.997
arnB
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.961
SBS25486.1
Hypothetical protein.
 
 
 0.933
neuA
CMP-N,N'-diacetyllegionaminic acid synthase.
 
  
 0.927
SBS25499.1
Hypothetical protein.
 
   
 0.907
pseB
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
   
 0.901
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.873
pheA_1
P-protein.
    
  0.781
gltB
Glutamate synthase [NADPH] large chain precursor.
   
 
 0.776
rfbM
Mannose-1-phosphate guanylyltransferase RfbM.
    
 0.773
Your Current Organism:
Marinomonas aquimarina
NCBI taxonomy Id: 295068
Other names: CCUG 49439, CECT 5080, CIP 108405, M. aquimarina, Marinomonas aquamarina, Marinomonas aquimarina corrig. Macian et al. 2005, strain 11SM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.