STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsE_1Type I secretion system membrane fusion protein PrsE. (483 aa)    
Predicted Functional Partners:
apxIB
Toxin RTX-I translocation ATP-binding protein.
 0.992
tolC_1
Outer membrane protein TolC precursor.
 
 0.981
prsD
Type I secretion system ATP-binding protein PrsD.
  
 0.950
bepC
Outer membrane efflux protein BepC precursor.
 
 0.931
tolC_2
Outer membrane protein TolC precursor.
  
 0.884
ttgF
Toluene efflux pump outer membrane protein TtgF precursor.
  
 0.832
oprM
Outer membrane protein OprM precursor.
  
 0.832
SBS34399.1
Outer membrane efflux protein.
  
 0.830
SBS33461.1
Outer membrane efflux protein.
  
 0.808
apxIA_1
RTX-I toxin determinant A from serotypes 1/9.
 
  
 0.719
Your Current Organism:
Marinomonas aquimarina
NCBI taxonomy Id: 295068
Other names: CCUG 49439, CECT 5080, CIP 108405, M. aquimarina, Marinomonas aquamarina, Marinomonas aquimarina corrig. Macian et al. 2005, strain 11SM4
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