STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degPPeriplasmic serine endoprotease DegP precursor. (354 aa)    
Predicted Functional Partners:
SBS28270.1
Hypothetical protein.
  
 
 0.941
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.910
phoE
Outer membrane pore protein E precursor.
    
 
 0.758
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
 
 
 0.736
kinE_2
Sporulation kinase E.
  
  
 0.707
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.702
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
   0.695
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.694
ompA
Outer membrane protein A precursor.
    
 
 0.665
SBS34927.1
Hypothetical protein.
    
 
 0.665
Your Current Organism:
Marinomonas aquimarina
NCBI taxonomy Id: 295068
Other names: CCUG 49439, CECT 5080, CIP 108405, M. aquimarina, Marinomonas aquamarina, Marinomonas aquimarina corrig. Macian et al. 2005, strain 11SM4
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.