STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBS31250.1SprA-related family protein. (257 aa)    
Predicted Functional Partners:
cheY_6
Chemotaxis protein CheY.
 
     0.759
cpxA_2
Sensor protein CpxA.
 
     0.692
SBS35882.1
Late competence development protein ComFB.
  
     0.664
SBS31242.1
Bacterial type II secretion system protein F domain protein.
       0.596
epsE_2
Type II secretion system protein E.
       0.596
yacG
DNA gyrase inhibitor YacG; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
       0.592
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.592
pppA
Leader peptidase PppA; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.592
pilE
Fimbrial protein precursor; Belongs to the N-Me-Phe pilin family.
       0.592
SBS34863.1
Hypothetical protein.
  
     0.592
Your Current Organism:
Marinomonas aquimarina
NCBI taxonomy Id: 295068
Other names: CCUG 49439, CECT 5080, CIP 108405, M. aquimarina, Marinomonas aquamarina, Marinomonas aquimarina corrig. Macian et al. 2005, strain 11SM4
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