STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBS34557.1Hypothetical protein. (305 aa)    
Predicted Functional Partners:
SBS34538.1
Hypothetical protein.
 
     0.830
SBS34524.1
Hypothetical protein.
 
     0.810
SBS34531.1
Hypothetical protein; SNF2 family N-terminal domain.
 
     0.805
SBS34512.1
Hypothetical protein.
 
     0.800
SBS34518.1
Hypothetical protein.
 
     0.800
SBS34505.1
Hypothetical protein.
 
     0.798
SBS34509.1
TraM recognition site of TraD and TraG.
 
     0.792
SBS34515.1
Transglycosylase SLT domain protein.
 
     0.785
ssb_3
Single-stranded DNA-binding protein.
 
     0.776
SBS34597.1
Hypothetical protein.
 
     0.776
Your Current Organism:
Marinomonas aquimarina
NCBI taxonomy Id: 295068
Other names: CCUG 49439, CECT 5080, CIP 108405, M. aquimarina, Marinomonas aquamarina, Marinomonas aquimarina corrig. Macian et al. 2005, strain 11SM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.