STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acrEMultidrug export protein AcrE precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (368 aa)    
Predicted Functional Partners:
czcA_2
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.991
tolC_2
Outer membrane protein TolC precursor.
 
 0.886
bepE_1
Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.882
tolC_1
Outer membrane protein TolC precursor.
 
 0.878
mexB_1
Multidrug resistance protein MexB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.877
swrC
Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.864
bepE_2
Efflux pump membrane transporter BepE.
 
 0.861
mexB_2
Multidrug resistance protein MexB.
 
 0.858
ttgF
Toluene efflux pump outer membrane protein TtgF precursor.
  
 0.857
oprM
Outer membrane protein OprM precursor.
  
 0.857
Your Current Organism:
Marinomonas aquimarina
NCBI taxonomy Id: 295068
Other names: CCUG 49439, CECT 5080, CIP 108405, M. aquimarina, Marinomonas aquamarina, Marinomonas aquimarina corrig. Macian et al. 2005, strain 11SM4
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