STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumCFumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (464 aa)    
Predicted Functional Partners:
SEM19164.1
Succinate dehydrogenase subunit A.
 
 0.983
SEM52531.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.981
SEM75498.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.981
SEM10816.1
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 0.973
SEM55470.1
Citrate synthase; Belongs to the citrate synthase family.
   
 0.967
SEM19134.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 0.955
mqo
Malate dehydrogenase (quinone).
    
 0.937
SEM13644.1
Malate synthase; Belongs to the malate synthase family.
     
 0.935
SEM69577.1
Fumarylacetoacetate hydrolase.
   
 0.922
SEM18871.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
    
 0.920
Your Current Organism:
Chryseobacterium taichungense
NCBI taxonomy Id: 295069
Other names: C. taichungense, CCUG 50001, CIP 108519, Chryseobacterium taichungense Shen et al. 2005, DSM 17453, strain CC-TWGS1-8
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