STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM78512.1Butirosin biosynthesis protein H, N-terminal. (331 aa)    
Predicted Functional Partners:
SEM78470.1
ABC-2 type transport system permease protein.
 
     0.953
SEM78490.1
ABC-2 type transport system ATP-binding protein.
 
     0.936
SEM78526.1
Hypothetical protein.
 
     0.931
SEM78550.1
Hypothetical protein.
 
     0.927
SEM78604.1
Hypothetical protein.
 
     0.882
SEM78586.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
 
     0.879
SEM78351.1
Hypothetical protein.
 
     0.874
SEM78566.1
3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase.
 
     0.870
SEM78625.1
Hypothetical protein.
 
     0.858
SEM21390.1
Hypothetical protein.
   
   0.845
Your Current Organism:
Chryseobacterium taichungense
NCBI taxonomy Id: 295069
Other names: C. taichungense, CCUG 50001, CIP 108519, Chryseobacterium taichungense Shen et al. 2005, DSM 17453, strain CC-TWGS1-8
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.