STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM97339.1Type IV secretion-system coupling protein DNA-binding domain-containing protein. (664 aa)    
Predicted Functional Partners:
SEM97314.1
Bacteroides conjugative transposon TraN protein.
 
     0.917
SEM97293.1
Bacteroides conjugative transposon TraM protein.
 
     0.916
SEM97251.1
Bacteroides conjugative transposon TraK protein.
 
     0.897
SEM97232.1
Hypothetical protein.
 
     0.896
SEM97047.1
Protein of unknown function.
 
     0.894
SEM97095.1
CagE, TrbE, VirB family, component of type IV transporter system.
 
     0.894
SEM97125.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.894
SEM97405.1
Hypothetical protein.
 
     0.874
SEM96990.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.831
SEM97007.1
Chromosome partitioning protein.
 
     0.821
Your Current Organism:
Chryseobacterium taichungense
NCBI taxonomy Id: 295069
Other names: C. taichungense, CCUG 50001, CIP 108519, Chryseobacterium taichungense Shen et al. 2005, DSM 17453, strain CC-TWGS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.